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pyGenomeViz

Python3 OS License Latest PyPI version Bioconda

Overview

pyGenomeViz is a genome visualization python package for comparative genomics implemented based on matplotlib. This package is developed for the purpose of easily and beautifully plotting genomic features and sequence similarity comparison links between multiple genomes. It supports genome visualization of Genbank format file from both API & CLI, and can be saved figure in various formats (JPG/PNG/SVG/PDF). User can use pyGenomeViz for interactive genome visualization figure plotting on jupyter notebook, or automatic genome visualization figure plotting in genome analysis scripts/pipelines.

pygenomeviz_gallery.png

pyGenomeViz example plot gallery

Installation

Python 3.7 or later is required for installation.

Install PyPI package:

pip install pygenomeviz

Install bioconda package:

conda install -c conda-forge -c bioconda pygenomeviz