pyMSAviz

Overview

pyMSAviz is a MSA(Multiple Sequence Alignment) visualization python package for sequence analysis implemented based on matplotlib. This package is developed for the purpose of easily and beautifully plotting MSA in Python. It also implements the functionality to add markers, text annotations, highlights to specific positions and ranges in MSA. pyMSAviz was developed inspired by Jalview and ggmsa.

Fig.1 Simple visualization result

Fig.2 Customized visualization result

Installation

Python 3.9 or later is required for installation.

Install PyPI package:

pip install pymsaviz

Install bioconda package:

conda install -c conda-forge -c bioconda pymsaviz